PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009764685.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 188aa    MW: 21279.8 Da    PI: 4.9139
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009764685.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-1961112256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     +y GVr ++ +g+++AeIrd + ng   r++lg+f+taeeAa a+++a+++++g+
  XP_009764685.1  61 HYIGVRKRP-WGKFAAEIRDSTRNG--IRVWLGTFDTAEEAALAYDQAALSMRGP 112
                     699******.**********44465..*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.0E-1461111IPR001471AP2/ERF domain
PROSITE profilePS5103222.04961119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-3061120IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2361121IPR016177DNA-binding domain
SMARTSM003806.3E-3561125IPR001471AP2/ERF domain
CDDcd000187.37E-3061120No hitNo description
PRINTSPR003676.9E-106273IPR001471AP2/ERF domain
PRINTSPR003676.9E-1085101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MNSSSCSELS FDSDWPPLFL NTDDVEEQKM ISSEKSASEA DFFKEIKCEK VQELPNKEEN  60
HYIGVRKRPW GKFAAEIRDS TRNGIRVWLG TFDTAEEAAL AYDQAALSMR GPSTCLNFPV  120
EIVQESLRGF KCSGKEGSSQ VEAIKEKHKK RHSKGKRKQI TKEENVFVFE DLGSDLLDEL  180
LSECSTSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2861122566ATERF1
3gcc_A2e-2861122566ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754502e-46HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764685.11e-138PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC84e-47ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLM1B0S27e-65M1B0S2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000344872e-64(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-27ethylene response factor 1